Tris-borate-EDTA (TBE) buffer is often used for agarose gel electrophoresis in the analysis of DNA products resulting from
PCR amplification, DNA purification protocols, or
DNA cloning experiments. It is particularly useful for separation of smaller DNA fragments (MW < 1000), for example small products of
restriction enzyme digests. TBE has a greater buffering capacity and will give sharper resolution than
TAE buffer. TBE is generally more expensive than TAE, and inhibits DNA ligase which may cause problems if subsequent DNA purification and ligation steps are intended.